IL_8C3A_298
3D structure
- PDB id
- 8C3A (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of ailanthone bound to the Candida albicans 80S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3 Å
Loop
- Sequence
- ACCGAGUAG*CGAAACU
- Length
- 16 nucleotides
- Bulged bases
- 8C3A|1|AT|C|73
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8C3A_298 not in the Motif Atlas
- Homologous match to IL_8C3A_148
- Geometric discrepancy: 0.0386
- The information below is about IL_8C3A_148
- Detailed Annotation
- 8x7 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_04346.9
- Basepair signature
- cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 14
Unit IDs
8C3A|1|AT|A|72
8C3A|1|AT|C|73
8C3A|1|AT|C|74
8C3A|1|AT|G|75
8C3A|1|AT|A|76
8C3A|1|AT|G|77
8C3A|1|AT|U|78
8C3A|1|AT|A|79
8C3A|1|AT|G|80
*
8C3A|1|AT|C|100
8C3A|1|AT|G|101
8C3A|1|AT|A|102
8C3A|1|AT|A|103
8C3A|1|AT|A|104
8C3A|1|AT|C|105
8C3A|1|AT|U|106
Current chains
- Chain AT
- 5S
Nearby chains
- Chain AS
- Large subunit ribosomal RNA; LSU rRNA
- Chain BB
- 60S ribosomal protein L7-A
- Chain BE
- 60S ribosomal protein L10
- Chain BN
- 60S ribosomal protein L20
- Chain BO
- 60S ribosomal protein L21-A
Coloring options: