IL_8C3A_348

3D structure

PDB id

8C3A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of ailanthone bound to the Candida albicans 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GGUC*GGAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8C3A_348 not in the Motif Atlas

Geometric match to IL_4V88_430

Geometric discrepancy: 0.0737

The information below is about IL_4V88_430

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_67085.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

55

Unit IDs

8C3A|1|B|G|856
8C3A|1|B|G|857
8C3A|1|B|U|858
8C3A|1|B|C|859
*
8C3A|1|B|G|938
8C3A|1|B|G|939
8C3A|1|B|A|940
8C3A|1|B|C|941

Current chains

Chain B

18S

Nearby chains

Chain D

40S ribosomal protein S1

Chain P

40S ribosomal protein S13

Chain d

40S ribosomal protein S27