IL_8C3A_357
3D structure
- PDB id
- 8C3A (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of ailanthone bound to the Candida albicans 80S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3 Å
Loop
- Sequence
- GGAGUAUG*UGAAAC
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8C3A_357 not in the Motif Atlas
- Homologous match to IL_8C3A_446
- Geometric discrepancy: 0.0468
- The information below is about IL_8C3A_446
- Detailed Annotation
- 8x6 Sarcin-Ricin with inserted Y; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_41756.2
- Basepair signature
- cWW-tSH-tHH-cSH-tWH-tHS-cWW-L
- Number of instances in this motif group
- 5
Unit IDs
8C3A|1|B|G|1096
8C3A|1|B|G|1097
8C3A|1|B|A|1098
8C3A|1|B|G|1099
8C3A|1|B|U|1100
8C3A|1|B|A|1101
8C3A|1|B|U|1102
8C3A|1|B|G|1103
*
8C3A|1|B|U|1114
8C3A|1|B|G|1115
8C3A|1|B|A|1116
8C3A|1|B|A|1117
8C3A|1|B|A|1118
8C3A|1|B|C|1119
Current chains
- Chain B
- 18S
Nearby chains
- Chain 1
- Large subunit ribosomal RNA; LSU rRNA
- Chain AO
- 60S ribosomal protein L41
- Chain Z
- Ribosomal protein S23 (S12)
Coloring options: