IL_8C9C_012

3D structure

PDB id

8C9C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Time limited cryo-EM reveals early ribosome assembly in action

Experimental method

ELECTRON MICROSCOPY

Resolution

6.62 Å

Loop

Sequence

UUAG*CAAAAA

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8C9C_012 not in the Motif Atlas

Homologous match to IL_7A0S_008

Geometric discrepancy: 0.5515

The information below is about IL_7A0S_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_05192.4

Basepair signature

cWW-L-R-L-R-L-cWW-L

Number of instances in this motif group

3

Unit IDs

8C9C|1|A|U|292
8C9C|1|A|U|293
8C9C|1|A|A|294
8C9C|1|A|G|295
*
8C9C|1|A|C|343
8C9C|1|A|A|344
8C9C|1|A|A|345
8C9C|1|A|A|346
8C9C|1|A|A|347
8C9C|1|A|A|348

Current chains

Chain A

23S rRNA

Nearby chains

Chain U

50S ribosomal protein L24