IL_8CAM_069

3D structure

PDB id

8CAM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Evernimicin bound to the 50S subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

1.86 Å

Loop

Sequence

UGCAAAC*GGACGUAUA

Length

16 nucleotides

Bulged bases

8CAM|1|a|A|1801, 8CAM|1|a|C|1816, 8CAM|1|a|U|1820

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8CAM_069 not in the Motif Atlas

Homologous match to IL_5J7L_313

Geometric discrepancy: 0.0389

The information below is about IL_5J7L_313

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_17069.5

Basepair signature

cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

Number of instances in this motif group

5

Unit IDs

8CAM|1|a|U|1798
8CAM|1|a|G|1799
8CAM|1|a|C|1800
8CAM|1|a|A|1801
8CAM|1|a|A|1802
8CAM|1|a|A|1803
8CAM|1|a|C|1804
*
8CAM|1|a|G|1813
8CAM|1|a|G|1814
8CAM|1|a|A|1815
8CAM|1|a|C|1816
8CAM|1|a|G|1817
8CAM|1|a|U|1818
8CAM|1|a|A|1819
8CAM|1|a|U|1820
8CAM|1|a|A|1821

Current chains

Chain a

23S rRNA

Nearby chains

Chain c

Large ribosomal subunit protein uL2