IL_8CIV_021

3D structure

PDB id

8CIV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translocation intermediate 5 (TI-5) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.47 Å

Loop

Sequence

GAAUGUAG*UAUUAUAGC

Length

17 nucleotides

Bulged bases

8CIV|1|AA|U|534, 8CIV|1|AA|U|558

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8CIV_021 not in the Motif Atlas

Homologous match to IL_5TBW_020

Geometric discrepancy: 0.1093

The information below is about IL_5TBW_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_07703.1

Basepair signature

cWW-tSH-cSH-tWH-cSH-cHW-cWH-cWW-cWW

Number of instances in this motif group

2

Unit IDs

8CIV|1|AA|G|531
8CIV|1|AA|A|532
8CIV|1|AA|A|533
8CIV|1|AA|U|534
8CIV|1|AA|G|535
8CIV|1|AA|U|536
8CIV|1|AA|A|537
8CIV|1|AA|G|538
*
8CIV|1|AA|U|553
8CIV|1|AA|A|554
8CIV|1|AA|U|555
8CIV|1|AA|U|556
8CIV|1|AA|A|557
8CIV|1|AA|U|558
8CIV|1|AA|A|559
8CIV|1|AA|G|560
8CIV|1|AA|C|561

Current chains

Chain AA

25S ribosomal RNA

Nearby chains

Chain E

60S ribosomal protein L20-A

Chain PP

60S ribosomal protein L14-A