IL_8CIV_066

3D structure

PDB id

8CIV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translocation intermediate 5 (TI-5) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.47 Å

Loop

Sequence

GUCAAC*GGAC

Length

10 nucleotides

Bulged bases

8CIV|1|AA|G|1514

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8CIV_066 not in the Motif Atlas

Homologous match to IL_5TBW_062

Geometric discrepancy: 0.0904

The information below is about IL_5TBW_062

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_51005.1

Basepair signature

cWW-L-R-tWH-cWW-L-L

Number of instances in this motif group

2

Unit IDs

8CIV|1|AA|G|1500
8CIV|1|AA|U|1501
8CIV|1|AA|C|1502
8CIV|1|AA|A|1503
8CIV|1|AA|A|1504
8CIV|1|AA|C|1505
*
8CIV|1|AA|G|1513
8CIV|1|AA|G|1514
8CIV|1|AA|A|1515
8CIV|1|AA|C|1516

Current chains

Chain AA

25S ribosomal RNA

Nearby chains

Chain B

60S ribosomal protein L17-A

Chain D

60S ribosomal protein L19-A

Chain X

60S ribosomal protein L39