IL_8CIV_176

3D structure

PDB id

8CIV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translocation intermediate 5 (TI-5) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.47 Å

Loop

Sequence

UAUCAA*UUUCAACG

Length

14 nucleotides

Bulged bases

8CIV|1|c|U|313, 8CIV|1|c|C|351

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8CIV_176 not in the Motif Atlas

Homologous match to IL_4V88_402

Geometric discrepancy: 0.077

The information below is about IL_4V88_402

Detailed Annotation

Kink-turn with non-sequential stacking

Broad Annotation

Kink-turn

Motif group

IL_45067.5

Basepair signature

cWW-tSH-tSS-tHS-R-cWW-cWW-R

Number of instances in this motif group

16

Unit IDs

8CIV|1|c|U|311
8CIV|1|c|A|312
8CIV|1|c|U|313
8CIV|1|c|C|314
8CIV|1|c|A|315
8CIV|1|c|A|316
*
8CIV|1|c|U|348
8CIV|1|c|U|349
8CIV|1|c|U|350
8CIV|1|c|C|351
8CIV|1|c|A|352
8CIV|1|c|A|353
8CIV|1|c|C|354
8CIV|1|c|G|355

Current chains

Chain c

18S ribosomal RNA

Nearby chains

Chain l

40S ribosomal protein S8-B

Chain o

40S ribosomal protein S11-A

Chain z

40S ribosomal protein S23-A