IL_8CKU_021

3D structure

PDB id

8CKU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translocation intermediate 1 (TI-1*) of 80S S. cerevisiae ribosome with ligands and eEF2 in the absence of sordarin

Experimental method

ELECTRON MICROSCOPY

Resolution

3.11 Å

Loop

Sequence

GAAUGUAG*UAUUAUAGC

Length

17 nucleotides

Bulged bases

8CKU|1|AA|U|534, 8CKU|1|AA|U|558

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8CKU_021 not in the Motif Atlas

Homologous match to IL_5TBW_020

Geometric discrepancy: 0.1685

The information below is about IL_5TBW_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_07703.1

Basepair signature

cWW-tSH-cSH-tWH-cSH-cHW-cWH-cWW-cWW

Number of instances in this motif group

2

Unit IDs

8CKU|1|AA|G|531
8CKU|1|AA|A|532
8CKU|1|AA|A|533
8CKU|1|AA|U|534
8CKU|1|AA|G|535
8CKU|1|AA|U|536
8CKU|1|AA|A|537
8CKU|1|AA|G|538
*
8CKU|1|AA|U|553
8CKU|1|AA|A|554
8CKU|1|AA|U|555
8CKU|1|AA|U|556
8CKU|1|AA|A|557
8CKU|1|AA|U|558
8CKU|1|AA|A|559
8CKU|1|AA|G|560
8CKU|1|AA|C|561

Current chains

Chain AA

25S ribosomal RNA

Nearby chains

Chain E

60S ribosomal protein L20-A

Chain PP

60S ribosomal protein L14-A