IL_8CKU_040
3D structure
- PDB id
- 8CKU (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Translocation intermediate 1 (TI-1*) of 80S S. cerevisiae ribosome with ligands and eEF2 in the absence of sordarin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.11 Å
Loop
- Sequence
- GAGGUAA*UAAAUAU
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8CKU_040 not in the Motif Atlas
- Homologous match to IL_5TBW_038
- Geometric discrepancy: 0.0906
- The information below is about IL_5TBW_038
- Detailed Annotation
- 7x7 Sarcin-Ricin with intercalated A; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_93830.3
- Basepair signature
- cWW-cWW-L-R-cSH-R-tWH-tHS-cWW
- Number of instances in this motif group
- 4
Unit IDs
8CKU|1|AA|G|991
8CKU|1|AA|A|992
8CKU|1|AA|G|993
8CKU|1|AA|G|994
8CKU|1|AA|U|995
8CKU|1|AA|A|996
8CKU|1|AA|A|997
*
8CKU|1|AA|U|1052
8CKU|1|AA|A|1053
8CKU|1|AA|A|1054
8CKU|1|AA|A|1055
8CKU|1|AA|U|1056
8CKU|1|AA|A|1057
8CKU|1|AA|U|1058
Current chains
- Chain AA
- 25S ribosomal RNA
Nearby chains
- Chain BB
- 5S ribosomal RNA; 5S rRNA
- Chain F
- 60S ribosomal protein L21-A
- Chain HH
- 60S ribosomal protein L5
- Chain JJ
- 60S ribosomal protein L7-A
- Chain MM
- 60S ribosomal protein L10
Coloring options: