IL_8CKU_048

3D structure

PDB id

8CKU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translocation intermediate 1 (TI-1*) of 80S S. cerevisiae ribosome with ligands and eEF2 in the absence of sordarin

Experimental method

ELECTRON MICROSCOPY

Resolution

3.11 Å

Loop

Sequence

UUUG*C(A2M)GA

Length

8 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8CKU_048 not in the Motif Atlas

Geometric match to IL_402D_001

Geometric discrepancy: 0.2563

The information below is about IL_402D_001

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_77658.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

34

Unit IDs

8CKU|1|AA|U|1123
8CKU|1|AA|U|1124
8CKU|1|AA|U|1125
8CKU|1|AA|G|1126
*
8CKU|1|AA|C|1132
8CKU|1|AA|A2M|1133
8CKU|1|AA|G|1134
8CKU|1|AA|A|1135

Current chains

Chain AA

25S ribosomal RNA

Nearby chains

Chain BB

5S ribosomal RNA; 5S rRNA

Chain F

60S ribosomal protein L21-A

Chain MM

60S ribosomal protein L10

Chain N

60S ribosomal protein L29