3D structure

PDB id
8CKU (explore in PDB, NAKB, or RNA 3D Hub)
Description
Translocation intermediate 1 (TI-1*) of 80S S. cerevisiae ribosome with ligands and eEF2 in the absence of sordarin
Experimental method
ELECTRON MICROSCOPY
Resolution
3.11 Å

Loop

Sequence
CGGAAUU*GGAGAUG
Length
14 nucleotides
Bulged bases
8CKU|1|AA|U|1716, 8CKU|1|AA|A|1729
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8CKU_075 not in the Motif Atlas
Homologous match to IL_5TBW_073
Geometric discrepancy: 0.122
The information below is about IL_5TBW_073
Detailed Annotation
Kink-turn
Broad Annotation
No text annotation
Motif group
IL_60192.2
Basepair signature
cWW-tSH-tSH-tSS-tHS-L-R-cWW
Number of instances in this motif group
3

Unit IDs

8CKU|1|AA|C|1711
8CKU|1|AA|G|1712
8CKU|1|AA|G|1713
8CKU|1|AA|A|1714
8CKU|1|AA|A|1715
8CKU|1|AA|U|1716
8CKU|1|AA|U|1717
*
8CKU|1|AA|G|1727
8CKU|1|AA|G|1728
8CKU|1|AA|A|1729
8CKU|1|AA|G|1730
8CKU|1|AA|A|1731
8CKU|1|AA|U|1732
8CKU|1|AA|G|1733

Current chains

Chain AA
25S ribosomal RNA

Nearby chains

Chain D
60S ribosomal protein L19-A
Chain L
60S ribosomal protein L27-A
Chain O
60S ribosomal protein L30
Chain S
60S ribosomal protein L34-A
Chain b
60S ribosomal protein L43-A
Chain p
40S ribosomal protein S13

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.1632 s