IL_8CKU_164
3D structure
- PDB id
- 8CKU (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Translocation intermediate 1 (TI-1*) of 80S S. cerevisiae ribosome with ligands and eEF2 in the absence of sordarin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.11 Å
Loop
- Sequence
- UCGU*AA
- Length
- 6 nucleotides
- Bulged bases
- 8CKU|1|c|C|114, 8CKU|1|c|G|115
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8CKU_164 not in the Motif Atlas
- Homologous match to IL_4V88_392
- Geometric discrepancy: 0.151
- The information below is about IL_4V88_392
- Detailed Annotation
- Multiple bulged bases
- Broad Annotation
- No text annotation
- Motif group
- IL_82107.1
- Basepair signature
- cWW-cWW
- Number of instances in this motif group
- 34
Unit IDs
8CKU|1|c|U|113
8CKU|1|c|C|114
8CKU|1|c|G|115
8CKU|1|c|U|116
*
8CKU|1|c|A|300
8CKU|1|c|A|301
Current chains
- Chain c
- 18S ribosomal RNA
Nearby chains
- Chain h
- 40S ribosomal protein S4-A
- Chain l
- 40S ribosomal protein S8-A
- Chain o
- 40S ribosomal protein S11-A
Coloring options: