IL_8CMJ_022

3D structure

PDB id

8CMJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translocation intermediate 4 (TI-4*) of 80S S. cerevisiae ribosome with eEF2 in the absence of sordarin

Experimental method

ELECTRON MICROSCOPY

Resolution

3.79 Å

Loop

Sequence

GAAUGUAG*UAUUAUAGC

Length

17 nucleotides

Bulged bases

8CMJ|1|AA|U|534, 8CMJ|1|AA|U|558

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8CMJ_022 not in the Motif Atlas

Homologous match to IL_5TBW_020

Geometric discrepancy: 0.1484

The information below is about IL_5TBW_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_07703.1

Basepair signature

cWW-tSH-cSH-tWH-cSH-cHW-cWH-cWW-cWW

Number of instances in this motif group

2

Unit IDs

8CMJ|1|AA|G|531
8CMJ|1|AA|A|532
8CMJ|1|AA|A|533
8CMJ|1|AA|U|534
8CMJ|1|AA|G|535
8CMJ|1|AA|U|536
8CMJ|1|AA|A|537
8CMJ|1|AA|G|538
*
8CMJ|1|AA|U|553
8CMJ|1|AA|A|554
8CMJ|1|AA|U|555
8CMJ|1|AA|U|556
8CMJ|1|AA|A|557
8CMJ|1|AA|U|558
8CMJ|1|AA|A|559
8CMJ|1|AA|G|560
8CMJ|1|AA|C|561

Current chains

Chain AA

25S ribosomal RNA

Nearby chains

Chain E

60S ribosomal protein L20-A

Chain PP

60S ribosomal protein L14-A