IL_8CMJ_036
3D structure
- PDB id
- 8CMJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Translocation intermediate 4 (TI-4*) of 80S S. cerevisiae ribosome with eEF2 in the absence of sordarin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.79 Å
Loop
- Sequence
- G(OMG)G*UAAUC
- Length
- 8 nucleotides
- Bulged bases
- 8CMJ|1|AA|A|920, 8CMJ|1|AA|A|921, 8CMJ|1|AA|U|922
- QA status
- Modified nucleotides: OMG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8CMJ_036 not in the Motif Atlas
- Geometric match to IL_5TBW_033
- Geometric discrepancy: 0.1608
- The information below is about IL_5TBW_033
- Detailed Annotation
- Multiple bulged bases
- Broad Annotation
- No text annotation
- Motif group
- IL_90991.8
- Basepair signature
- cWW-cWW
- Number of instances in this motif group
- 6
Unit IDs
8CMJ|1|AA|G|907
8CMJ|1|AA|OMG|908
8CMJ|1|AA|G|909
*
8CMJ|1|AA|U|919
8CMJ|1|AA|A|920
8CMJ|1|AA|A|921
8CMJ|1|AA|U|922
8CMJ|1|AA|C|923
Current chains
- Chain AA
- 25S ribosomal RNA
Nearby chains
- Chain B
- 60S ribosomal protein L17-A
- Chain EE
- 60S ribosomal protein L2-A
- Chain QQ
- 60S ribosomal protein L15-A
- Chain V
- 60S ribosomal protein L37-A
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