3D structure

PDB id
8CMJ (explore in PDB, NAKB, or RNA 3D Hub)
Description
Translocation intermediate 4 (TI-4*) of 80S S. cerevisiae ribosome with eEF2 in the absence of sordarin
Experimental method
ELECTRON MICROSCOPY
Resolution
3.79 Å

Loop

Sequence
CUAAG*CGAAAG
Length
11 nucleotides
Bulged bases
8CMJ|1|AA|A|1588, 8CMJ|1|AA|A|1589
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8CMJ_068 not in the Motif Atlas
Homologous match to IL_5TBW_063
Geometric discrepancy: 0.1719
The information below is about IL_5TBW_063
Detailed Annotation
UAA/GAN
Broad Annotation
No text annotation
Motif group
IL_89002.4
Basepair signature
cWW-tWH-cWW-L-cWW-tHS
Number of instances in this motif group
15

Unit IDs

8CMJ|1|AA|C|1532
8CMJ|1|AA|U|1533
8CMJ|1|AA|A|1534
8CMJ|1|AA|A|1535
8CMJ|1|AA|G|1536
*
8CMJ|1|AA|C|1585
8CMJ|1|AA|G|1586
8CMJ|1|AA|A|1587
8CMJ|1|AA|A|1588
8CMJ|1|AA|A|1589
8CMJ|1|AA|G|1590

Current chains

Chain AA
25S ribosomal RNA

Nearby chains

Chain CC
5.8S ribosomal RNA; 5.8S rRNA
Chain EE
60S ribosomal protein L2-A
Chain S
60S ribosomal protein L34-A
Chain V
60S ribosomal protein L37-A
Chain X
60S ribosomal protein L39

Coloring options:


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