IL_8CMJ_068
3D structure
- PDB id
- 8CMJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Translocation intermediate 4 (TI-4*) of 80S S. cerevisiae ribosome with eEF2 in the absence of sordarin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.79 Å
Loop
- Sequence
- CUAAG*CGAAAG
- Length
- 11 nucleotides
- Bulged bases
- 8CMJ|1|AA|A|1588, 8CMJ|1|AA|A|1589
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8CMJ_068 not in the Motif Atlas
- Homologous match to IL_5TBW_063
- Geometric discrepancy: 0.1719
- The information below is about IL_5TBW_063
- Detailed Annotation
- UAA/GAN
- Broad Annotation
- No text annotation
- Motif group
- IL_89002.4
- Basepair signature
- cWW-tWH-cWW-L-cWW-tHS
- Number of instances in this motif group
- 15
Unit IDs
8CMJ|1|AA|C|1532
8CMJ|1|AA|U|1533
8CMJ|1|AA|A|1534
8CMJ|1|AA|A|1535
8CMJ|1|AA|G|1536
*
8CMJ|1|AA|C|1585
8CMJ|1|AA|G|1586
8CMJ|1|AA|A|1587
8CMJ|1|AA|A|1588
8CMJ|1|AA|A|1589
8CMJ|1|AA|G|1590
Current chains
- Chain AA
- 25S ribosomal RNA
Nearby chains
- Chain CC
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain EE
- 60S ribosomal protein L2-A
- Chain S
- 60S ribosomal protein L34-A
- Chain V
- 60S ribosomal protein L37-A
- Chain X
- 60S ribosomal protein L39
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