IL_8CMJ_072

3D structure

PDB id

8CMJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translocation intermediate 4 (TI-4*) of 80S S. cerevisiae ribosome with eEF2 in the absence of sordarin

Experimental method

ELECTRON MICROSCOPY

Resolution

3.79 Å

Loop

Sequence

UCUUC*GGAAUA

Length

11 nucleotides

Bulged bases

8CMJ|1|AA|U|1629, 8CMJ|1|AA|U|1815

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8CMJ_072 not in the Motif Atlas

Homologous match to IL_8C3A_072

Geometric discrepancy: 0.2122

The information below is about IL_8C3A_072

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_48431.1

Basepair signature

cWW-L-R-L-R-L-cWW

Number of instances in this motif group

2

Unit IDs

8CMJ|1|AA|U|1627
8CMJ|1|AA|C|1628
8CMJ|1|AA|U|1629
8CMJ|1|AA|U|1630
8CMJ|1|AA|C|1631
*
8CMJ|1|AA|G|1811
8CMJ|1|AA|G|1812
8CMJ|1|AA|A|1813
8CMJ|1|AA|A|1814
8CMJ|1|AA|U|1815
8CMJ|1|AA|A|1816

Current chains

Chain AA

25S ribosomal RNA

Nearby chains

Chain L

60S ribosomal protein L27-A