IL_8CMJ_073

3D structure

PDB id

8CMJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translocation intermediate 4 (TI-4*) of 80S S. cerevisiae ribosome with eEF2 in the absence of sordarin

Experimental method

ELECTRON MICROSCOPY

Resolution

3.79 Å

Loop

Sequence

UGAAU*AGGAA

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8CMJ_073 not in the Motif Atlas

Homologous match to IL_8C3A_073

Geometric discrepancy: 0.1994

The information below is about IL_8C3A_073

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_95716.2

Basepair signature

cWW-cWW-tHS-tHS-tSH-cWW

Number of instances in this motif group

18

Unit IDs

8CMJ|1|AA|U|1645
8CMJ|1|AA|G|1646
8CMJ|1|AA|A|1647
8CMJ|1|AA|A|1648
8CMJ|1|AA|U|1649
*
8CMJ|1|AA|A|1806
8CMJ|1|AA|G|1807
8CMJ|1|AA|G|1808
8CMJ|1|AA|A|1809
8CMJ|1|AA|A|1810

Current chains

Chain AA

25S ribosomal RNA

Nearby chains

Chain EE

60S ribosomal protein L2-A

Chain L

60S ribosomal protein L27-A

Chain S

60S ribosomal protein L34-A