IL_8CMJ_109
3D structure
- PDB id
- 8CMJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Translocation intermediate 4 (TI-4*) of 80S S. cerevisiae ribosome with eEF2 in the absence of sordarin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.79 Å
Loop
- Sequence
- UUGA*UACA
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8CMJ_109 not in the Motif Atlas
- Homologous match to IL_5TBW_100
- Geometric discrepancy: 0.1702
- The information below is about IL_5TBW_100
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_67085.2
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 55
Unit IDs
8CMJ|1|AA|U|2718
8CMJ|1|AA|U|2719
8CMJ|1|AA|G|2720
8CMJ|1|AA|A|2721
*
8CMJ|1|AA|U|2735
8CMJ|1|AA|A|2736
8CMJ|1|AA|C|2737
8CMJ|1|AA|A|2738
Current chains
- Chain AA
- 25S ribosomal RNA
Nearby chains
- Chain C
- 60S ribosomal protein L18-A
- Chain F
- 60S ribosomal protein L21-A
- Chain HH
- 60S ribosomal protein L5
- Chain N
- 60S ribosomal protein L29
- Chain a
- 60S ribosomal protein L42-A
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