IL_8CMJ_126

3D structure

PDB id

8CMJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translocation intermediate 4 (TI-4*) of 80S S. cerevisiae ribosome with eEF2 in the absence of sordarin

Experimental method

ELECTRON MICROSCOPY

Resolution

3.79 Å

Loop

Sequence

CAAU*AGAACG

Length

10 nucleotides

Bulged bases

8CMJ|1|AA|A|3142, 8CMJ|1|AA|C|3143

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8CMJ_126 not in the Motif Atlas

Homologous match to IL_8C3A_123

Geometric discrepancy: 0.2823

The information below is about IL_8C3A_123

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.12

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

35

Unit IDs

8CMJ|1|AA|C|3004
8CMJ|1|AA|A|3005
8CMJ|1|AA|A|3006
8CMJ|1|AA|U|3007
*
8CMJ|1|AA|A|3139
8CMJ|1|AA|G|3140
8CMJ|1|AA|A|3141
8CMJ|1|AA|A|3142
8CMJ|1|AA|C|3143
8CMJ|1|AA|G|3144

Current chains

Chain AA

25S ribosomal RNA

Nearby chains

Chain A

60S ribosomal protein L16-A

Chain CC

5.8S ribosomal RNA; 5.8S rRNA

Chain FF

60S ribosomal protein L3