IL_8CMJ_128
3D structure
- PDB id
- 8CMJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Translocation intermediate 4 (TI-4*) of 80S S. cerevisiae ribosome with eEF2 in the absence of sordarin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.79 Å
Loop
- Sequence
- CUUAGUAC*GGAACAG
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8CMJ_128 not in the Motif Atlas
- Geometric match to IL_5TBW_116
- Geometric discrepancy: 0.1858
- The information below is about IL_5TBW_116
- Detailed Annotation
- 8x7 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_04346.8
- Basepair signature
- cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 15
Unit IDs
8CMJ|1|AA|C|3018
8CMJ|1|AA|U|3019
8CMJ|1|AA|U|3020
8CMJ|1|AA|A|3021
8CMJ|1|AA|G|3022
8CMJ|1|AA|U|3023
8CMJ|1|AA|A|3024
8CMJ|1|AA|C|3025
*
8CMJ|1|AA|G|3030
8CMJ|1|AA|G|3031
8CMJ|1|AA|A|3032
8CMJ|1|AA|A|3033
8CMJ|1|AA|C|3034
8CMJ|1|AA|A|3035
8CMJ|1|AA|G|3036
Current chains
- Chain AA
- 25S ribosomal RNA
Nearby chains
- Chain Aa
- Elongation factor 2
- Chain FF
- 60S ribosomal protein L3
- Chain H
- 60S ribosomal protein L23-A
- Chain LL
- RPL9A isoform 1
- Chain Y
- Ubiquitin-60S ribosomal protein L40
Coloring options: