IL_8CMJ_178

3D structure

PDB id

8CMJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translocation intermediate 4 (TI-4*) of 80S S. cerevisiae ribosome with eEF2 in the absence of sordarin

Experimental method

ELECTRON MICROSCOPY

Resolution

3.79 Å

Loop

Sequence

UAUCAA*UUUCAACG

Length

14 nucleotides

Bulged bases

8CMJ|1|c|U|313, 8CMJ|1|c|C|351

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8CMJ_178 not in the Motif Atlas

Homologous match to IL_4V88_402

Geometric discrepancy: 0.1495

The information below is about IL_4V88_402

Detailed Annotation

Kink-turn with non-sequential stacking

Broad Annotation

Kink-turn

Motif group

IL_45067.5

Basepair signature

cWW-tSH-tSS-tHS-R-cWW-cWW-R

Number of instances in this motif group

16

Unit IDs

8CMJ|1|c|U|311
8CMJ|1|c|A|312
8CMJ|1|c|U|313
8CMJ|1|c|C|314
8CMJ|1|c|A|315
8CMJ|1|c|A|316
*
8CMJ|1|c|U|348
8CMJ|1|c|U|349
8CMJ|1|c|U|350
8CMJ|1|c|C|351
8CMJ|1|c|A|352
8CMJ|1|c|A|353
8CMJ|1|c|C|354
8CMJ|1|c|G|355

Current chains

Chain c

18S ribosomal RNA

Nearby chains

Chain l

40S ribosomal protein S8-B

Chain o

40S ribosomal protein S11-A

Chain z

40S ribosomal protein S23-A