3D structure

PDB id
8CMJ (explore in PDB, NAKB, or RNA 3D Hub)
Description
Translocation intermediate 4 (TI-4*) of 80S S. cerevisiae ribosome with eEF2 in the absence of sordarin
Experimental method
ELECTRON MICROSCOPY
Resolution
3.79 Å

Loop

Sequence
ACCA*UCCCU
Length
9 nucleotides
Bulged bases
8CMJ|1|c|C|1158, 8CMJ|1|c|C|1159
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8CMJ_296 not in the Motif Atlas
Geometric match to IL_8C3A_449
Geometric discrepancy: 0.2414
The information below is about IL_8C3A_449
Detailed Annotation
C-loop
Broad Annotation
No text annotation
Motif group
IL_63596.10
Basepair signature
cWW-cWS-cSH-tWH-cWW-L
Number of instances in this motif group
16

Unit IDs

8CMJ|1|c|A|1157
8CMJ|1|c|C|1158
8CMJ|1|c|C|1159
8CMJ|1|c|A|1160
*
8CMJ|1|c|U|1617
8CMJ|1|c|C|1618
8CMJ|1|c|C|1619
8CMJ|1|c|C|1620
8CMJ|1|c|U|1621

Current chains

Chain c
18S ribosomal RNA

Nearby chains

Chain 4
40S ribosomal protein S28-A
Chain i
40S ribosomal protein S5
Chain s
40S ribosomal protein S16-A
Chain w
40S ribosomal protein S20

Coloring options:


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