IL_8CMJ_296
3D structure
- PDB id
- 8CMJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Translocation intermediate 4 (TI-4*) of 80S S. cerevisiae ribosome with eEF2 in the absence of sordarin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.79 Å
Loop
- Sequence
- ACCA*UCCCU
- Length
- 9 nucleotides
- Bulged bases
- 8CMJ|1|c|C|1158, 8CMJ|1|c|C|1159
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8CMJ_296 not in the Motif Atlas
- Geometric match to IL_8C3A_449
- Geometric discrepancy: 0.2414
- The information below is about IL_8C3A_449
- Detailed Annotation
- C-loop
- Broad Annotation
- No text annotation
- Motif group
- IL_63596.10
- Basepair signature
- cWW-cWS-cSH-tWH-cWW-L
- Number of instances in this motif group
- 16
Unit IDs
8CMJ|1|c|A|1157
8CMJ|1|c|C|1158
8CMJ|1|c|C|1159
8CMJ|1|c|A|1160
*
8CMJ|1|c|U|1617
8CMJ|1|c|C|1618
8CMJ|1|c|C|1619
8CMJ|1|c|C|1620
8CMJ|1|c|U|1621
Current chains
- Chain c
- 18S ribosomal RNA
Nearby chains
- Chain 4
- 40S ribosomal protein S28-A
- Chain i
- 40S ribosomal protein S5
- Chain s
- 40S ribosomal protein S16-A
- Chain w
- 40S ribosomal protein S20
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