IL_8CRX_023
3D structure
- PDB id
- 8CRX (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cutibacterium acnes 70S ribosome with mRNA, P-site tRNA and Sarecycline bound
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.78 Å
Loop
- Sequence
- G(PSU)GCCAG*CGGUGAUAC
- Length
- 16 nucleotides
- Bulged bases
- 8CRX|1|A|G|514, 8CRX|1|A|U|516
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8CRX_023 not in the Motif Atlas
- Geometric match to IL_4V88_415
- Geometric discrepancy: 0.2235
- The information below is about IL_4V88_415
- Detailed Annotation
- Kink-turn related
- Broad Annotation
- No text annotation
- Motif group
- IL_54177.1
- Basepair signature
- cWW-cSW-tWH-L-R-L-R-tHS-cWW
- Number of instances in this motif group
- 5
Unit IDs
8CRX|1|A|G|497
8CRX|1|A|PSU|498
8CRX|1|A|G|499
8CRX|1|A|C|500
8CRX|1|A|C|501
8CRX|1|A|A|502
8CRX|1|A|G|503
*
8CRX|1|A|C|510
8CRX|1|A|G|511
8CRX|1|A|G|512
8CRX|1|A|U|513
8CRX|1|A|G|514
8CRX|1|A|A|515
8CRX|1|A|U|516
8CRX|1|A|A|517
8CRX|1|A|C|518
Current chains
- Chain A
- RNA (1537-MER)
Nearby chains
- Chain D
- 30S ribosomal protein S4
- Chain G
- 30S ribosomal protein S3
- Chain L
- 30S ribosomal protein S12
- Chain Y
- 32MF mRNA
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