IL_8CSP_015

3D structure

PDB id

8CSP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human mitochondrial small subunit assembly intermediate (State A)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.66 Å

Loop

Sequence

GUGCCAG*CGGUCACAC

Length

16 nucleotides

Bulged bases

8CSP|1|A|C|904, 8CSP|1|A|C|906, 8CSP|1|A|A|907

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8CSP_015 not in the Motif Atlas

Geometric match to IL_4V88_415

Geometric discrepancy: 0.1107

The information below is about IL_4V88_415

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_54177.1

Basepair signature

cWW-cSW-tWH-L-R-L-R-tHS-cWW

Number of instances in this motif group

5

Unit IDs

8CSP|1|A|G|887
8CSP|1|A|U|888
8CSP|1|A|G|889
8CSP|1|A|C|890
8CSP|1|A|C|891
8CSP|1|A|A|892
8CSP|1|A|G|893
*
8CSP|1|A|C|900
8CSP|1|A|G|901
8CSP|1|A|G|902
8CSP|1|A|U|903
8CSP|1|A|C|904
8CSP|1|A|A|905
8CSP|1|A|C|906
8CSP|1|A|A|907
8CSP|1|A|C|908

Current chains

Chain A

12S mitochondrial rRNA

Nearby chains

Chain D

28S ribosomal protein S5, mitochondrial

Chain J

28S ribosomal protein S12, mitochondrial