IL_8CVM_039

3D structure

PDB id

8CVM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cutibacterium acnes 50S ribosomal subunit with P-site tRNA and Sarecycline bound in the local refined map

Experimental method

ELECTRON MICROSCOPY

Resolution

2.66 Å

Loop

Sequence

CUCAGUG*CUUAAG

Length

13 nucleotides

Bulged bases

8CVM|1|a|U|1225, 8CVM|1|a|A|1227

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8CVM_039 not in the Motif Atlas

Homologous match to IL_5J7L_280

Geometric discrepancy: 0.085

The information below is about IL_5J7L_280

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_57188.5

Basepair signature

cWW-tWW-L-tWW-cWW-cSH

Number of instances in this motif group

5

Unit IDs

8CVM|1|a|C|1101
8CVM|1|a|U|1102
8CVM|1|a|C|1103
8CVM|1|a|A|1104
8CVM|1|a|G|1105
8CVM|1|a|U|1106
8CVM|1|a|G|1107
*
8CVM|1|a|C|1223
8CVM|1|a|U|1224
8CVM|1|a|U|1225
8CVM|1|a|A|1226
8CVM|1|a|A|1227
8CVM|1|a|G|1228

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain 3

50S ribosomal protein L36

Chain V

50S ribosomal protein bL37

Chain g

50S ribosomal protein L6

Chain i

50S ribosomal protein L13