IL_8ETI_041

3D structure

PDB id

8ETI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Fkbp39 associated 60S nascent ribosome State 1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CGG*CCG

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8ETI_041 not in the Motif Atlas

Geometric match to IL_364D_004

Geometric discrepancy: 0.2818

The information below is about IL_364D_004

Detailed Annotation

Self complementary

Broad Annotation

Self complementary

Motif group

IL_86319.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

269

Unit IDs

8ETI|1|1|C|1263
8ETI|1|1|G|1264
8ETI|1|1|G|1265
*
8ETI|1|1|C|1285
8ETI|1|1|C|1286
8ETI|1|1|G|1287

Current chains

Chain 1

RNA (1564-MER)

Nearby chains

Chain W

Ribosome assembly factor mrt4