IL_8ETI_055
3D structure
- PDB id
- 8ETI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Fkbp39 associated 60S nascent ribosome State 1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- CUUAGUAC*GGAACCG
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8ETI_055 not in the Motif Atlas
- Homologous match to IL_8C3A_125
- Geometric discrepancy: 0.2377
- The information below is about IL_8C3A_125
- Detailed Annotation
- 8x7 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_04346.8
- Basepair signature
- cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 15
Unit IDs
8ETI|1|1|C|3114
8ETI|1|1|U|3115
8ETI|1|1|U|3116
8ETI|1|1|A|3117
8ETI|1|1|G|3118
8ETI|1|1|U|3119
8ETI|1|1|A|3120
8ETI|1|1|C|3121
*
8ETI|1|1|G|3126
8ETI|1|1|G|3127
8ETI|1|1|A|3128
8ETI|1|1|A|3129
8ETI|1|1|C|3130
8ETI|1|1|C|3131
8ETI|1|1|G|3132
Current chains
- Chain 1
- RNA (1564-MER)
Nearby chains
- Chain B
- 60S ribosomal protein L3-A
- Chain H
- 60S ribosomal protein L9-A
- Chain b
- Probable nucleolar GTP-binding protein 1
- Chain y
- Eukaryotic translation initiation factor 6
- Chain z
- UPF0642 protein C32H8.05
Coloring options: