IL_8EVP_178
3D structure
- PDB id
- 8EVP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), Structure I
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.38 Å
Loop
- Sequence
- UAUCAA*UUUCAACG
- Length
- 14 nucleotides
- Bulged bases
- 8EVP|1|B5|U|313, 8EVP|1|B5|C|351
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8EVP_178 not in the Motif Atlas
- Homologous match to IL_4V88_402
- Geometric discrepancy: 0.0696
- The information below is about IL_4V88_402
- Detailed Annotation
- Kink-turn with non-sequential stacking
- Broad Annotation
- Kink-turn
- Motif group
- IL_45067.5
- Basepair signature
- cWW-tSH-tSS-tHS-R-cWW-cWW-R
- Number of instances in this motif group
- 16
Unit IDs
8EVP|1|B5|U|311
8EVP|1|B5|A|312
8EVP|1|B5|U|313
8EVP|1|B5|C|314
8EVP|1|B5|A|315
8EVP|1|B5|A|316
*
8EVP|1|B5|U|348
8EVP|1|B5|U|349
8EVP|1|B5|U|350
8EVP|1|B5|C|351
8EVP|1|B5|A|352
8EVP|1|B5|A|353
8EVP|1|B5|C|354
8EVP|1|B5|G|355
Current chains
- Chain B5
- 18S rRNA
Nearby chains
- Chain BI
- 40S ribosomal protein S8-A
- Chain BL
- 40S ribosomal protein S11-A
- Chain BX
- 40S ribosomal protein S23-A
Coloring options: