IL_8EVP_202

3D structure

PDB id

8EVP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), Structure I

Experimental method

ELECTRON MICROSCOPY

Resolution

2.38 Å

Loop

Sequence

UGG*CCA

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary: UGG,CCA

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8EVP_202 not in the Motif Atlas

Geometric match to IL_1N33_070

Geometric discrepancy: 0.2312

The information below is about IL_1N33_070

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_86319.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

269

Unit IDs

8EVP|1|B5|U|821
8EVP|1|B5|G|822
8EVP|1|B5|G|823
*
8EVP|1|B5|C|847
8EVP|1|B5|C|848
8EVP|1|B5|A|849

Current chains

Chain B5

18S rRNA

Nearby chains

Chain AR

60S ribosomal protein L19-A