IL_8EVP_207

3D structure

PDB id

8EVP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), Structure I

Experimental method

ELECTRON MICROSCOPY

Resolution

2.38 Å

Loop

Sequence

CGGGG*CAAG

Length

9 nucleotides

Bulged bases

8EVP|1|B5|G|875

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8EVP_207 not in the Motif Atlas

Geometric match to IL_4V88_431

Geometric discrepancy: 0.082

The information below is about IL_4V88_431

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_67085.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

55

Unit IDs

8EVP|1|B5|C|873
8EVP|1|B5|G|874
8EVP|1|B5|G|875
8EVP|1|B5|G|876
8EVP|1|B5|G|877
*
8EVP|1|B5|C|949
8EVP|1|B5|A|950
8EVP|1|B5|A|951
8EVP|1|B5|G|952

Current chains

Chain B5

18S rRNA

Nearby chains

Chain BB

RPS1A isoform 1

Chain BN

40S ribosomal protein S13

Chain Ba

RPS26B isoform 1