IL_8FL3_044

3D structure

PDB id

8FL3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human nuclear pre-60S ribosomal subunit (State I2)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.53 Å

Loop

Sequence

GG*CGCC

Length

6 nucleotides

Bulged bases

8FL3|1|L3|C|1378

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8FL3_044 not in the Motif Atlas

Geometric match to IL_1NBS_009

Geometric discrepancy: 0.2357

The information below is about IL_1NBS_009

Detailed Annotation

Major groove intercalation

Broad Annotation

Major groove intercalation

Motif group

IL_71421.2

Basepair signature

cWW-cWW

Number of instances in this motif group

35

Unit IDs

8FL3|1|L3|G|1360
8FL3|1|L3|G|1361
*
8FL3|1|L3|C|1376
8FL3|1|L3|G|1377
8FL3|1|L3|C|1378
8FL3|1|L3|C|1379

Current chains

Chain L3

28S rRNA

Nearby chains

Chain L6

60S ribosomal protein L13

Chain L9

60S ribosomal protein L15

Chain SA

60S ribosomal protein L4