IL_8FL3_065

3D structure

PDB id

8FL3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human nuclear pre-60S ribosomal subunit (State I2)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.53 Å

Loop

Sequence

AC(PSU)U*AACU

Length

8 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8FL3_065 not in the Motif Atlas

Geometric match to IL_1JID_002

Geometric discrepancy: 0.2493

The information below is about IL_1JID_002

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

39

Unit IDs

8FL3|1|L3|A|1858
8FL3|1|L3|C|1859
8FL3|1|L3|PSU|1860
8FL3|1|L3|U|1861
*
8FL3|1|L3|A|1873
8FL3|1|L3|A|1874
8FL3|1|L3|C|1875
8FL3|1|L3|U|1876

Current chains

Chain L3

28S rRNA

Nearby chains

Chain L4

5S ribosomal RNA; 5S rRNA

Chain NB

Guanine nucleotide-binding protein-like 3

Chain SD

60S ribosomal protein L7