IL_8FL9_036

3D structure

PDB id

8FL9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human nuclear pre-60S ribosomal subunit (State J3)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.75 Å

Loop

Sequence

GAAGGUGG*UGUUACAGC

Length

17 nucleotides

Bulged bases

8FL9|1|L3|G|748, 8FL9|1|L3|C|916

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8FL9_036 not in the Motif Atlas

Geometric match to IL_5TBW_020

Geometric discrepancy: 0.1759

The information below is about IL_5TBW_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_07703.1

Basepair signature

cWW-tSH-cSH-tWH-cSH-cHW-cWH-cWW-cWW

Number of instances in this motif group

2

Unit IDs

8FL9|1|L3|G|745
8FL9|1|L3|A|746
8FL9|1|L3|A|747
8FL9|1|L3|G|748
8FL9|1|L3|G|749
8FL9|1|L3|U|750
8FL9|1|L3|G|751
8FL9|1|L3|G|752
*
8FL9|1|L3|U|911
8FL9|1|L3|G|912
8FL9|1|L3|U|913
8FL9|1|L3|U|914
8FL9|1|L3|A|915
8FL9|1|L3|C|916
8FL9|1|L3|A|917
8FL9|1|L3|G|918
8FL9|1|L3|C|919

Current chains

Chain L3

28S rRNA

Nearby chains

Chain L8

60S ribosomal protein L14

Chain LC

60S ribosomal protein L18a