IL_8FL9_073

3D structure

PDB id

8FL9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human nuclear pre-60S ribosomal subunit (State J3)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.75 Å

Loop

Sequence

UAUAGACAG*CCGAA

Length

14 nucleotides

Bulged bases

8FL9|1|L3|A|1960

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8FL9_073 not in the Motif Atlas

Homologous match to IL_5TBW_054

Geometric discrepancy: 0.1947

The information below is about IL_5TBW_054

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_90538.5

Basepair signature

cWW-tSS-tSS-tSH-L-tHS-R-cWW-L-L

Number of instances in this motif group

6

Unit IDs

8FL9|1|L3|U|1957
8FL9|1|L3|A|1958
8FL9|1|L3|U|1959
8FL9|1|L3|A|1960
8FL9|1|L3|G|1961
8FL9|1|L3|A|1962
8FL9|1|L3|C|1963
8FL9|1|L3|A|1964
8FL9|1|L3|G|1965
*
8FL9|1|L3|C|2022
8FL9|1|L3|C|2023
8FL9|1|L3|G|2024
8FL9|1|L3|A|2025
8FL9|1|L3|A|2026

Current chains

Chain L3

28S rRNA

Nearby chains

Chain LC

60S ribosomal protein L18a

Chain SQ

mRNA turnover protein 4 homolog