3D structure

PDB id
8FL9 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Human nuclear pre-60S ribosomal subunit (State J3)
Experimental method
ELECTRON MICROSCOPY
Resolution
2.75 Å

Loop

Sequence
UGUA(PSU)(OMG)U*GCGAAG
Length
13 nucleotides
Bulged bases
8FL9|1|L3|U|4634
QA status
Modified nucleotides: PSU, OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8FL9_143 not in the Motif Atlas
Geometric match to IL_5J7L_063
Geometric discrepancy: 0.3914
The information below is about IL_5J7L_063
Detailed Annotation
Triple sheared related
Broad Annotation
Triple sheared
Motif group
IL_80231.1
Basepair signature
cWW-L-R-L-R-L-R-tHS-cWW
Number of instances in this motif group
2

Unit IDs

8FL9|1|L3|U|4632
8FL9|1|L3|G|4633
8FL9|1|L3|U|4634
8FL9|1|L3|A|4635
8FL9|1|L3|PSU|4636
8FL9|1|L3|OMG|4637
8FL9|1|L3|U|4638
*
8FL9|1|L3|G|4661
8FL9|1|L3|C|4662
8FL9|1|L3|G|4663
8FL9|1|L3|A|4664
8FL9|1|L3|A|4665
8FL9|1|L3|G|4666

Current chains

Chain L3
28S rRNA

Nearby chains

Chain LN
60S ribosomal protein L3
Chain LP
60S ribosomal protein L31
Chain NP
Zinc finger protein 593
Chain SV
Probable ribosome biogenesis protein RLP24

Coloring options:


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