3D structure

PDB id
8FL9 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Human nuclear pre-60S ribosomal subunit (State J3)
Experimental method
ELECTRON MICROSCOPY
Resolution
2.75 Å

Loop

Sequence
AUUAU*AGAAU
Length
10 nucleotides
Bulged bases
8FL9|1|L3|A|4708
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8FL9_146 not in the Motif Atlas
Homologous match to IL_5TBW_120
Geometric discrepancy: 0.1244
The information below is about IL_5TBW_120
Detailed Annotation
UAA/GAN
Broad Annotation
No text annotation
Motif group
IL_89002.4
Basepair signature
cWW-tWH-cWW-L-cWW-tHS
Number of instances in this motif group
15

Unit IDs

8FL9|1|L3|A|4681
8FL9|1|L3|U|4682
8FL9|1|L3|U|4683
8FL9|1|L3|A|4684
8FL9|1|L3|U|4685
*
8FL9|1|L3|A|4705
8FL9|1|L3|G|4706
8FL9|1|L3|A|4707
8FL9|1|L3|A|4708
8FL9|1|L3|U|4709

Current chains

Chain L3
28S rRNA

Nearby chains

Chain L7
60S ribosomal protein L13a
Chain NF
Ribosome biogenesis protein NSA2 homolog
Chain NK
Protein LLP homolog
Chain SG
60S ribosomal protein L9

Coloring options:


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