IL_8FRU_016
3D structure
- PDB id
- 8FRU (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 60S subunit of the Giardia lamblia 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.49 Å
Loop
- Sequence
- GAAAG*CUGGUAGC
- Length
- 13 nucleotides
- Bulged bases
- 8FRU|1|1|G|648, 8FRU|1|1|G|652
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8FRU_016 not in the Motif Atlas
- Geometric match to IL_5TBW_028
- Geometric discrepancy: 0.0847
- The information below is about IL_5TBW_028
- Detailed Annotation
- tHW-tHW cross-strand stack
- Broad Annotation
- No text annotation
- Motif group
- IL_17470.7
- Basepair signature
- cWW-tWW-L-R-tWH-L-cWW
- Number of instances in this motif group
- 7
Unit IDs
8FRU|1|1|G|520
8FRU|1|1|A|521
8FRU|1|1|A|522
8FRU|1|1|A|523
8FRU|1|1|G|524
*
8FRU|1|1|C|646
8FRU|1|1|U|647
8FRU|1|1|G|648
8FRU|1|1|G|649
8FRU|1|1|U|650
8FRU|1|1|A|651
8FRU|1|1|G|652
8FRU|1|1|C|653
Current chains
- Chain 1
- 28S rRNA
Nearby chains
- Chain C
- 60S ribosomal protein uL4
- Chain L
- 60S ribosomal protein eL13
- Chain N
- 60S ribosomal protein eL15
- Chain a
- 60S ribosomal protein uL15
- Chain j
- 60S ribosomal protein eL37
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