IL_8FRU_033
3D structure
- PDB id
- 8FRU (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 60S subunit of the Giardia lamblia 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.49 Å
Loop
- Sequence
- UGCGCCGC*GA
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8FRU_033 not in the Motif Atlas
- Homologous match to IL_8C3A_052
- Geometric discrepancy: 0.2763
- The information below is about IL_8C3A_052
- Detailed Annotation
- SSU/LSU pseudoknot
- Broad Annotation
- No text annotation
- Motif group
- IL_84902.1
- Basepair signature
- cWW-L-cWW-L-L-R-cHH
- Number of instances in this motif group
- 2
Unit IDs
8FRU|1|1|U|881
8FRU|1|1|G|882
8FRU|1|1|C|883
8FRU|1|1|G|884
8FRU|1|1|C|885
8FRU|1|1|C|886
8FRU|1|1|G|887
8FRU|1|1|C|888
*
8FRU|1|1|G|1023
8FRU|1|1|A|1024
Current chains
- Chain 1
- 28S rRNA
Nearby chains
- Chain F
- 60S ribosomal protein uL30
- Chain O
- 60S ribosomal protein uL13
- Chain S
- 60S ribosomal protein eL20
- Chain f
- 60S ribosomal protein eL33
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