IL_8FRU_041
3D structure
- PDB id
- 8FRU (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 60S subunit of the Giardia lamblia 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.49 Å
Loop
- Sequence
- GCAGUAG*CGAGCC
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8FRU_041 not in the Motif Atlas
- Homologous match to IL_5TBW_061
- Geometric discrepancy: 0.1267
- The information below is about IL_5TBW_061
- Detailed Annotation
- 7x6 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_76042.3
- Basepair signature
- cWW-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 9
Unit IDs
8FRU|1|1|G|1130
8FRU|1|1|C|1131
8FRU|1|1|A|1132
8FRU|1|1|G|1133
8FRU|1|1|U|1134
8FRU|1|1|A|1135
8FRU|1|1|G|1136
*
8FRU|1|1|C|1840
8FRU|1|1|G|1841
8FRU|1|1|A|1842
8FRU|1|1|G|1843
8FRU|1|1|C|1844
8FRU|1|1|C|1845
Current chains
- Chain 1
- 28S rRNA
Nearby chains
- Chain 4
- 5.8S rRNA
- Chain C
- 60S ribosomal protein uL4
- Chain P
- 60S ribosomal protein uL22
Coloring options: