IL_8FRU_044
3D structure
- PDB id
- 8FRU (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 60S subunit of the Giardia lamblia 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.49 Å
Loop
- Sequence
- CUAAG*CGAACG
- Length
- 11 nucleotides
- Bulged bases
- 8FRU|1|1|A|1259, 8FRU|1|1|C|1260
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8FRU_044 not in the Motif Atlas
- Homologous match to IL_5TBW_063
- Geometric discrepancy: 0.1097
- The information below is about IL_5TBW_063
- Detailed Annotation
- UAA/GAN
- Broad Annotation
- No text annotation
- Motif group
- IL_89002.4
- Basepair signature
- cWW-tWH-cWW-L-cWW-tHS
- Number of instances in this motif group
- 15
Unit IDs
8FRU|1|1|C|1214
8FRU|1|1|U|1215
8FRU|1|1|A|1216
8FRU|1|1|A|1217
8FRU|1|1|G|1218
*
8FRU|1|1|C|1256
8FRU|1|1|G|1257
8FRU|1|1|A|1258
8FRU|1|1|A|1259
8FRU|1|1|C|1260
8FRU|1|1|G|1261
Current chains
- Chain 1
- 28S rRNA
Nearby chains
- Chain 4
- 5.8S rRNA
- Chain A
- 60S ribosomal protein uL2
- Chain g
- 60S ribosomal protein eL34
- Chain j
- 60S ribosomal protein eL37
- Chain l
- 60S ribosomal protein eL39
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