IL_8FRU_047

3D structure

PDB id

8FRU (explore in PDB, NAKB, or RNA 3D Hub)

Description

60S subunit of the Giardia lamblia 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.49 Å

Loop

Sequence

GCAC*GGCC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8FRU_047 not in the Motif Atlas

Geometric match to IL_4V88_430

Geometric discrepancy: 0.2094

The information below is about IL_4V88_430

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_67085.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

55

Unit IDs

8FRU|1|1|G|1324
8FRU|1|1|C|1325
8FRU|1|1|A|1326
8FRU|1|1|C|1327
*
8FRU|1|1|G|1427
8FRU|1|1|G|1428
8FRU|1|1|C|1429
8FRU|1|1|C|1430

Current chains

Chain 1

28S rRNA

Nearby chains

Chain R

60S ribosomal protein eL19

Chain g

60S ribosomal protein eL34

Chain p

60S ribosomal protein eL43