IL_8FRU_050
3D structure
- PDB id
- 8FRU (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 60S subunit of the Giardia lamblia 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.49 Å
Loop
- Sequence
- CGGACG*CGGAGAGG
- Length
- 14 nucleotides
- Bulged bases
- 8FRU|1|1|C|1380, 8FRU|1|1|A|1392
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8FRU_050 not in the Motif Atlas
- Geometric match to IL_3U4M_004
- Geometric discrepancy: 0.3045
- The information below is about IL_3U4M_004
- Detailed Annotation
- Kink-turn
- Broad Annotation
- No text annotation
- Motif group
- IL_90775.2
- Basepair signature
- cWW-tSS-tSH-L-tHS-tHS-cWW
- Number of instances in this motif group
- 30
Unit IDs
8FRU|1|1|C|1376
8FRU|1|1|G|1377
8FRU|1|1|G|1378
8FRU|1|1|A|1379
8FRU|1|1|C|1380
8FRU|1|1|G|1381
*
8FRU|1|1|C|1389
8FRU|1|1|G|1390
8FRU|1|1|G|1391
8FRU|1|1|A|1392
8FRU|1|1|G|1393
8FRU|1|1|A|1394
8FRU|1|1|G|1395
8FRU|1|1|G|1396
Current chains
- Chain 1
- 28S rRNA
Nearby chains
- Chain R
- 60S ribosomal protein eL19
- Chain Z
- 60S ribosomal protein eL27
- Chain c
- 60S ribosomal protein eL30
- Chain p
- 60S ribosomal protein eL43
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