IL_8FRU_089

3D structure

PDB id

8FRU (explore in PDB, NAKB, or RNA 3D Hub)

Description

60S subunit of the Giardia lamblia 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.49 Å

Loop

Sequence

CCAG*CGCG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8FRU_089 not in the Motif Atlas

Homologous match to IL_8C3A_123

Geometric discrepancy: 0.2921

The information below is about IL_8C3A_123

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.12

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

35

Unit IDs

8FRU|1|1|C|2420
8FRU|1|1|C|2421
8FRU|1|1|A|2422
8FRU|1|1|G|2423
*
8FRU|1|1|C|2553
8FRU|1|1|G|2554
8FRU|1|1|C|2555
8FRU|1|1|G|2556

Current chains

Chain 1

28S rRNA

Nearby chains

Chain B

60S ribosomal protein uL3

Chain O

60S ribosomal protein uL13