IL_8FRU_103
3D structure
- PDB id
- 8FRU (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 60S subunit of the Giardia lamblia 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.49 Å
Loop
- Sequence
- GGAAACU*AGAAGC
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8FRU_103 not in the Motif Atlas
- Homologous match to IL_8C3A_144
- Geometric discrepancy: 0.591
- The information below is about IL_8C3A_144
- Detailed Annotation
- Minor groove platform related
- Broad Annotation
- No text annotation
- Motif group
- IL_45841.1
- Basepair signature
- cWW-L-R-L-R-L-R-L-cWW-cWW
- Number of instances in this motif group
- 2
Unit IDs
8FRU|1|3|G|20
8FRU|1|3|G|21
8FRU|1|3|A|22
8FRU|1|3|A|23
8FRU|1|3|A|24
8FRU|1|3|C|25
8FRU|1|3|U|26
*
8FRU|1|3|A|52
8FRU|1|3|G|53
8FRU|1|3|A|54
8FRU|1|3|A|55
8FRU|1|3|G|56
8FRU|1|3|C|57
Current chains
- Chain 3
- 5S rRNA
Nearby chains
- Chain D
- 60S ribosomal protein uL18
- Chain J
- 60S ribosomal protein uL5
Coloring options: