IL_8G2U_080

3D structure

PDB id

8G2U (explore in PDB, NAKB, or RNA 3D Hub)

Description

Time-resolved cryo-EM study of the 70S recycling by the HflX:control-apo-70S at 900ms

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

AA*UACU

Length

6 nucleotides

Bulged bases

8G2U|1|B|A|2439

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8G2U_080 not in the Motif Atlas

Homologous match to IL_7A0S_076

Geometric discrepancy: 0.0799

The information below is about IL_7A0S_076

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_34520.2

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

62

Unit IDs

8G2U|1|B|A|2070
8G2U|1|B|A|2071
*
8G2U|1|B|U|2438
8G2U|1|B|A|2439
8G2U|1|B|C|2440
8G2U|1|B|U|2441

Current chains

Chain B

23S rRNA

Nearby chains

Chain C

50S ribosomal protein L2