IL_8G2U_105

3D structure

PDB id

8G2U (explore in PDB, NAKB, or RNA 3D Hub)

Description

Time-resolved cryo-EM study of the 70S recycling by the HflX:control-apo-70S at 900ms

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UGUUC*GGUAG

Length

10 nucleotides

Bulged bases

8G2U|1|B|U|2689, 8G2U|1|B|U|2690

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8G2U_105 not in the Motif Atlas

Homologous match to IL_5J7L_348

Geometric discrepancy: 0.0646

The information below is about IL_5J7L_348

Detailed Annotation

UAA/GAN related, with intercalation

Broad Annotation

UAA/GAN related, with intercalation

Motif group

IL_23774.1

Basepair signature

cWW-L-R-L-tHS-cWW

Number of instances in this motif group

11

Unit IDs

8G2U|1|B|U|2687
8G2U|1|B|G|2688
8G2U|1|B|U|2689
8G2U|1|B|U|2690
8G2U|1|B|C|2691
*
8G2U|1|B|G|2718
8G2U|1|B|G|2719
8G2U|1|B|U|2720
8G2U|1|B|A|2721
8G2U|1|B|G|2722

Current chains

Chain B

23S rRNA

Nearby chains

Chain D

50S ribosomal protein L3

Chain N

50S ribosomal protein L17

Chain P

50S ribosomal protein L19