IL_8G2U_138

3D structure

PDB id

8G2U (explore in PDB, NAKB, or RNA 3D Hub)

Description

Time-resolved cryo-EM study of the 70S recycling by the HflX:control-apo-70S at 900ms

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GUGCCAG*CGGUAAUAC

Length

16 nucleotides

Bulged bases

8G2U|1|v|A|532, 8G2U|1|v|U|534

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8G2U_138 not in the Motif Atlas

Geometric match to IL_4V88_415

Geometric discrepancy: 0.2057

The information below is about IL_4V88_415

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_54177.1

Basepair signature

cWW-cSW-tWH-L-R-L-R-tHS-cWW

Number of instances in this motif group

5

Unit IDs

8G2U|1|v|G|515
8G2U|1|v|U|516
8G2U|1|v|G|517
8G2U|1|v|C|518
8G2U|1|v|C|519
8G2U|1|v|A|520
8G2U|1|v|G|521
*
8G2U|1|v|C|528
8G2U|1|v|G|529
8G2U|1|v|G|530
8G2U|1|v|U|531
8G2U|1|v|A|532
8G2U|1|v|A|533
8G2U|1|v|U|534
8G2U|1|v|A|535
8G2U|1|v|C|536

Current chains

Chain v

16S rRNA

Nearby chains

Chain b

30S ribosomal protein S3

Chain c

30S ribosomal protein S4

Chain k

30S ribosomal protein S12