IL_8G31_079
3D structure
- PDB id
- 8G31 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Time-resolved cryo-EM study of the 70S recycling by the HflX:2nd Intermediate
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- GCGAAAUUCCUUG*CCUGCAC
- Length
- 20 nucleotides
- Bulged bases
- 8G31|1|B|A|1938, 8G31|1|B|U|1944, 8G31|1|B|U|1963, 8G31|1|B|C|1965, 8G31|1|B|A|1966
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8G31_079 not in the Motif Atlas
- Homologous match to IL_4WF9_077
- Geometric discrepancy: 0.5974
- The information below is about IL_4WF9_077
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_42218.2
- Basepair signature
- cWW-L-R-cHW-cWW-L-L-L-R-L
- Number of instances in this motif group
- 5
Unit IDs
8G31|1|B|G|1933
8G31|1|B|C|1934
8G31|1|B|G|1935
8G31|1|B|A|1936
8G31|1|B|A|1937
8G31|1|B|A|1938
8G31|1|B|U|1939
8G31|1|B|U|1940
8G31|1|B|C|1941
8G31|1|B|C|1942
8G31|1|B|U|1943
8G31|1|B|U|1944
8G31|1|B|G|1945
*
8G31|1|B|C|1961
8G31|1|B|C|1962
8G31|1|B|U|1963
8G31|1|B|G|1964
8G31|1|B|C|1965
8G31|1|B|A|1966
8G31|1|B|C|1967
Current chains
- Chain B
- 23S
Nearby chains
- Chain 6
- GTPase HflX
- Chain C
- 50S ribosomal protein L2
- Chain v
- Small subunit ribosomal RNA; SSU rRNA
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