IL_8G31_102

3D structure

PDB id

8G31 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Time-resolved cryo-EM study of the 70S recycling by the HflX:2nd Intermediate

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CUGAG*CGAGAUGAG

Length

14 nucleotides

Bulged bases

8G31|1|B|G|2780

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8G31_102 not in the Motif Atlas

Homologous match to IL_5J7L_345

Geometric discrepancy: 0.0983

The information below is about IL_5J7L_345

Detailed Annotation

tSH-tHS-tHW

Broad Annotation

tSH-tHS-tHW

Motif group

IL_04638.3

Basepair signature

cWW-tSH-tHW-tHS-cSH-cWW-L

Number of instances in this motif group

5

Unit IDs

8G31|1|B|C|2636
8G31|1|B|U|2637
8G31|1|B|G|2638
8G31|1|B|A|2639
8G31|1|B|G|2640
*
8G31|1|B|C|2774
8G31|1|B|G|2775
8G31|1|B|A|2776
8G31|1|B|G|2777
8G31|1|B|A|2778
8G31|1|B|U|2779
8G31|1|B|G|2780
8G31|1|B|A|2781
8G31|1|B|G|2782

Current chains

Chain B

23S

Nearby chains

Chain D

50S ribosomal protein L3

Chain J

50S ribosomal protein L13